Package: RcppML 0.5.6

RcppML: Rcpp Machine Learning Library

Fast machine learning algorithms including matrix factorization and divisive clustering for large sparse and dense matrices.

Authors:Zach DeBruine [aut, cre]

RcppML_0.5.6.tar.gz
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RcppML.pdf |RcppML.html✨
RcppML/json (API)

# Install 'RcppML' in R:
install.packages('RcppML', repos = c('https://zdebruine.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/zdebruine/rcppml/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:

On CRAN:

clusteringmatrix-factorizationnmfrcpprcppeigensparse-matrixcppopenmp

10.46 score 103 stars 44 packages 124 scripts 5.6k downloads 28 exports 8 dependencies

Last updated 1 years agofrom:5449a5b479. Checks:1 OK, 5 WARNING, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 20 2025
R-4.5-win-x86_64WARNINGJan 20 2025
R-4.5-linux-x86_64WARNINGJan 20 2025
R-4.4-win-x86_64WARNINGJan 20 2025
R-4.4-mac-x86_64WARNINGJan 20 2025
R-4.4-mac-aarch64WARNINGJan 20 2025
R-4.3-win-x86_64NOTEJan 20 2025
R-4.3-mac-x86_64NOTEJan 20 2025
R-4.3-mac-aarch64NOTEJan 20 2025

Exports:alignbipartiteMatchbipartitionbiplotcoercecosinecrossValidatedclustevaluateheadlnmfmsenmfnnlspredictprojectr_binomr_matrixr_sampler_sparsematrixr_unifshowsimulateNMFsortsparsitysubsetsummaryt

Dependencies:evaluatehighrknitrlatticeMatrixRcppxfunyaml

Getting Started with NMF

Zach DeBruine

Rendered fromgetting_started.Rmdusingknitr::rmarkdownon Jan 20 2025.

Last update: 2022-08-19
Started: 2021-10-12

Learning and Annotating NMF Models

Zach DeBruine

Rendered fromannotating_nmf_models.Rmdusingknitr::rmarkdownon Jan 20 2025.

Last update: 2022-08-19
Started: 2022-08-19

Robust NMF with random initializations

Zach DeBruine

Rendered fromrobust_nmf.Rmdusingknitr::rmarkdownon Jan 20 2025.

Last update: 2022-08-19
Started: 2021-10-21

Readme and manuals

Help Manual

Help pageTopics
Align two NMF modelsalign align,nmf-method
Align two matrices with bipartite matchingalign_models
Acute Myelogenous Leukemia cellsaml
Bipartite graph matchingbipartiteMatch
Bipartition a sample setbipartition
Biplot for NMF factorsbiplot,nmf-method
Cosine similaritycosine
Cross-validation for NMFcrossValidate plot.nmfCrossValidate
Divisive clusteringdclust
Evaluate an NMF modelevaluate evaluate,nmf-method
Bird species frequency in Hawaiihawaiibirds
Linked non-negative matrix factorizationlnmf
Movie ratingsmovielens
Mean squared error of factor modelmse
Non-negative matrix factorizationnmf nmf, nmf-class
Non-negative least squaresnnls
Project a model onto new dataproject
Random transpose-identical dense/sparse matrixr_matrix r_sparsematrix
Random distributions and samplesr_binom r_sample r_unif
RcppML: Rcpp Machine Learning LibraryRcppML-package RcppML
Simulate an NMF datasetsimulateNMF
Compute the sparsity of each NMF factorsparsity sparsity,nmf-method
nmf class methods$,nmf-method coerce,nmf,list-method dim,nmf-method dimnames,nmf-method head,nmf-method predict,nmf-method prod,nmf-method show,nmf-method sort,nmf-method subset,nmf-method t,nmf-method [,nmf,ANY,ANY,ANY-method [[,nmf-method
Summarize NMF factorsplot.nmfSummary summary,nmf-method